Publications

2019

aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data

Yang W, Rosenstiel P, Schulenburg H (2019) BMC Genomics in press

Microbial community assembly and co-adaptation in plant-metaorganisms

Hassani MA, Ozgut E, Seybold H, Dagan T, Stukenbrock EH (2019) Annu Rev Phytopathol 57: Accepted

Evolutionary “experiments” in symbiosis: the study of model animals provides insights into the mechanisms underlying diversity of host-microbe interactions

Bosch TCG, Guillemin K, McFall-Ngai M (2019) BioEssays, in press

The microbiome mediates environmental effects on ageing

Finlay B, Pettersson S, Melby M, Bosch TCG (2019) BioEssays, in press

Evaluating the quorum quenching potential of bacteria associated to Aurelia aurita and Mnemiopsis leidyi

Prasse D, Weiland-Bräuer N, Jaspers C, Reusch TBH , Schmitz RA (2019) bioRxiv. doi: 10.1101/602268

Microbiota differences of the comb jelly Mnemiopsis leidyi in native and invasive sub-populations

Jaspers C, Weiland-Bräuer N, Fischer M, Künzel S, Schmitz RA, Reusch TBH (2019) bioRxiv. doi: 10.1101/601419

Resolving structure and function of metaorganisms through a holistic framework 2 combining reductionist and integrative approaches

Jaspers C, Fraune S, Consortium of Australian Academy of Science Boden Research Conference Participants, Arnold AE, Miller DJ, Bosch TCG, Voolstra CR (2019) Zoology. doi: 10.1016/j.zool.2019.02.007

The functional repertoire encoded within the native microbiome of the model nematode Caenorhabditis elegans

Zimmermann J, Obeng N, Yang W, Pees B, Petersen B, Waschina S, Kissoyan KAB, Aidley J, Hoeppner MP, Bunk B, Spröer C, Leippe M, Dierking K, Kaleta C*, Schulenburg H* (2019) BioRxiv 554345. * Shared senior authorship  doi: 10.1101/554345

The inducible response of the nematode Caenorhabditis elegans to members of its natural microbiome across development and adult life

Yang W, Petersen C, Pees B, Zimmermann J, Waschina S, Dirksen P, Rosenstiel P, Tholey A, Leippe M, Dierking K, Kaleta C*, Schulenburg H*.  BioRxiv 554758.* Shared senior authorship doi: 10.1101/554758

Drosophila melanogaster in nutrition research—the importance of standardizing experimental diets

Lüersen K, Roeder T, Rimbach G (2019) Genes Nutr. 14: 3. doi: 10.1186/s12263-019-0627-9

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life-history traits

Snoek BL, Volkers RJM, Nijveen H, Petersen C, Dirksen P, Sterken MG, Nakad R, Riksen J, Rosenstiel P, Stastna JJ, Braeckman BP, Harvey SC, Schulenburg H*, Kammenga JE* (2019) BMC Biol. 17:24. * Shared senior authorship doi: 10.1186/s12915-019-0642-8

Potential role of host-derived quorum quenching in modulating bacterial colonization in the moon jellyfish Aurelia aurita

Weiland-Bräuer N, Pinnow N, Fischer MA, Schmitz RA (2019) Scientific Reports, 9(1), 34. DOI:10.1038/s41598-018-37321-z

Natural C. elegans microbiota protects against infection via production of a cyclic lipopeptide of the viscosin group

Kohar Kissoyan, Moritz Drechsler, Eva-Lena Stange, Johannes Zimmermann, Christoph Kaleta, Helge Bode und Katja Dierking (2019)  Current Biology. DOI: 10.1016/j.cub.2019.01.050

Epithelial endoplasmic reticulum stress orchestrates a protective IgA response

Joep Grootjans*, Niklas Krupka*, Shuhei Hosomi*, Juan D. Matute, Thomas Hanley, Svetlana Saveljeva, Thomas Gensollen, Jarom Heijmans, Hai Li, Julien P. Limenitakis, Stephanie C. Ganal-Vonarburg, Shengbao Suo, Adrienne M. Luoma, Yosuke Shimodaira, Jinzhi Duan, David Q. Shih, Margaret E. Conner, Jonathan N. Glickman, Gwenny M. Fuhler, Noah W. Palm, Marcel R. de Zoete, C. Janneke van der Woude, Guo-Cheng Yuan, Kai W. Wucherpfennig, Stephan R. Targan, Philip Rosenstiel, Richard A. Flavell, Kathy D. McCoy, Andrew J. Macpherson, Arthur Kaser und Richard S. Blumberg (2019) Science. DOI: 10.1126/science.aat7186

Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

Lagkouvardos I, Lesker TR, Hitch TCA, Gálvez EJC, Smit N, Neuhaus K, Wang J, Baines JF, Abt B, Stecher B, Overmann J, Strowig T, Clavel T. (2019) Microbiome 7(1):28. doi: 10.1186/s40168-019-0637-2

Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts

Rubin-Blum M, Antony CP, Sayavedra L, Martínez-Pérez C, Birgel D, Peckmann J, Wu Y, Cardenas P, MacDonald I, Marcon Y, Sahling H, Hentschel U, Dubilier N (2019) The ISME Journal , v 13, p 1209–1225. doi: 10.1038/s41396-019-0346-7