Publications

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2026
C5

Dual-niche profiling identifies maternal gut microbiome differences associated with intermittent preventive treatment with sulfadoxine-pyrimethamine, with no detectable association in vaginal communities

Amoako-Sakyi, D., Schaan, A. P., Oduro, E. A., Yangnemenga, E., Nartey, Y. A., Ken-Amoah, S., Okai, E., Awuku, Y. A., Adjei, G., Kusi, K. A., Essien-Baidoo, S., Hounmanou, Y. M. G., Groussin, M., Poyet, M., & Obiri-Yeboah, D. (2026). Scientific Reports. doi: https://doi.org/10.1038/s41598-026-75786-5

2026
A2
C5
INF
Z3

Convergent genomic evolution of human gut bacteria along an industrialization gradient

Rühlemann, M., Ma, Y., Szánthó, L. L., Waschina, S., Moitinho-Silva, L., Mews, L. C., Faus-Camarena, J., Jebens, H., Costa, J., Juimo, V., Fezeu, A., Agyei, A., Afihene, M. Y., Asibey, S. O., Awuku, Y. A., Duah, A., Nartey, Y. A., Ibrahim, F., Lim, Y. A. L., Tan, M. P., Onyekwere, C., Rusine, J., Mwikarago, I. E., Baines, J., Franke, A., Szöllősi, G. J., Xavier, R. J., Alm, E. J., Groussin, M., & Poyet, M. (2026). Cell. doi: https://doi.org/10.1016/j.cell.2026.10.014 

2026
A2
C2
C5
INF
Z3

Industrialization drives convergent microbiome and host physiological shifts in the human metaorganism

Poyet, M., Rühlemann, M., Schaan, A. P., Ma, Y., Moitinho-Silva, L., Wacker, E. M., Jebens, H., Patel, L., Nguyen, L. T. T., Zimmer, A., Plichta, D., McDonald, D., Stevens, C., Agyei, A., Afihene, M. Y., Asibey, S. O., Awuku, Y. A., Badiane, A. S., Corzett, C., Deme, A., Dominguez-Rodrigo, M., Duah, A., Fezeu, A., Froment, A., Gibbons, S., Girard, C., Hooker, J., Ibrahim, F., Iqaluk, D., Juimo, V., Kettunen, P., Lafosse, S., Lango-Yaya, E., Lee, S. C., Lehtimäki, J., Lim, Y. A. L., Mabulla, A., Mahachai, V., Mohamed, R. S., Moniz, K., Mwikarago, I. E., Nartey, Y. A., Ndiaye, D., Noel, M., Onyekwere, C., Pin, T. M., Plymoth, A., Roberts, L., Ruokolainen, L., Rusine, J., Segurel, L., Shapiro, B. J., Sigwazi, S., Sistiaga, A., Valles, K., Vatanen, T., Vilaichone, R., Rosenstiel, P., Baines, J., Franke, A., Ellinghaus, D., Knight, R., Daly, M., Xavier, R. J., & Alm, E. J., & Groussin, M. (2026). Cell. doi: https://doi.org/10.1016/j.cell.2026.10.016

2026
C1

Prioritize validation over discovery of novel antibiotics

Hanson, M. A., Bosch, T. C., Chen, I. A., & Zasloff, M. (2026). Proceedings of the National Academy of Sciences, 123(44), e2616439123. doi: https://doi.org/10.1073/pnas.2616439123

2026
C1

In vivo replication of a fully functional nerve net in a clonally reproducing animal

Sakib, E., Hofacker, L. M., Noack, C., Ströbel, F., Giez, C., Wittlieb, J., Klimovich, A., & Bosch, T. C. (2026). Communications Biology, 9(1), 1389. doi: https://doi.org/10.1038/s42003-026-11184-x

2026
Z3

Spatial lipidomics suggests fatty acid scavenging by an intranuclear parasite

Stüwe, M., Geier, B., Michellod, D., Porras, M. Á. G., Dubilier, N., & Liebeke, M. (2026). ISME Host Microbe, aazag017. doi: https://doi.org/10.1093/ismehm/aazag017

2026
B1
B2
C4

Phagocytosis of microbial symbionts supports embryonic nutrition in the sponge Halichondria panicea

Turon, M., Díez-Vives, C., Carrier, T. J., de la Cruz-Castillejo, L., Conejero, M., Steiner, L., Jung, S., Pita, L., Koutsouveli, V., Franzenburg, S., Hentschel, U., & Riesgo, A. (2026). Microbiome, 14, 211. doi: https://doi.org/10.1186/s40168-026-02473-y

2026
A2
C5
INF

Eukaryotic and bacterial gut communities vary along a lifestyle-associated urbanization gradient: comparative analysis of Germany and Madagascar

Saalfrank, J., Rühlemann, M. C., Rausch, P., Hey, J. C., Rakotoarivelo, R. A., Rasamoelina, T., Rakotozandrindrainy, R., Randriamampionona, N., Schwarz, N. G., Razafindrakoto, R., Fusco, D., Franke, A., & Bang, C. (2026). Gut Microbes, 18(1), 2701492. doi: https://doi.org/10.1080/19490976.2026.2701492

2026
A1
B1
Z3

c-JUN controls microbial colonization via selective phagocytosis in the sea anemone Nematostella

Kaya, N. H., Abukhalaf, M., Fuentes, G., Taubenheim, J., Hentschel, U., Tholey, A., & Fraune, S. (2026). Nature Communications, 17(1), 6087. doi: https://doi.org/10.1038/s41467-026-75511-w

2026
A1
A2
C5
INF

Genome-scale metabolic models predict diet-and lifestyle-driven shifts of ecological interactions in the gut microbiome

Marinos, G., Moors, K. A., Rühlemann, M., Waschina, S., Lieb, W., Franke, A., Laudes, M., Groussin, M., Poyet, M., Kaleta, C., & Kadibalban, A. S. (2025). bioRxiv, 2025-09. doi: https://doi.org/10.1080/19490976.2026.2694811

 

2026
C5

TOFU-MAaPO: fast, scalable and reproducible analysis of large metagenome sequence data from the Sequence Read Archive

Wacker, E. M., Rühlemann, M. C., Franke, A., & Ellinghaus, D. (2026). Nature Communications, 17(1), 5215. doi: https://doi.org/10.1038/s41467-026-74033-9

2026

The island biology of the host microbiome

Sarkar, A., Raulo, A., Stothart, M. R., Ibata, N. G., Harty, S., Metcalf, C. J. E., Bohannan, B. J. M., Bennett, G. M., & Carmody, R. N. (2026). The island biology of the host microbiome. Trends in Microbiology. doi: https://doi.org/10.1016/j.tim.2026.03.001

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