TOFU-MAaPO: fast, scalable and reproducible analysis of large metagenome sequence data from the Sequence Read Archive
The island biology of the host microbiome
Dietary patterns influence the in silico GABA production capacity of Bifidobacterium adolescentis HD17T2H and other human gut bacteria
Virtual Colon: spatiotemporal modeling of metabolic interactions in a computational colonic environment
Fecal detection of calprotectin subunits links inflammatory bowel disease activity with chronicity of intestinal inflammation
Sex-specific lifespan extension and anti-obesogenic effects of Salicornia europaea extract through Tor signaling modulation in Drosophila
Applying evolutionary theory to understand host–microbiome evolution
Chronic airway inflammation in Drosophila lacking the A20-like protein Trabid
ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
The interaction between the nematode Caenorhabditis elegans and its coexisting fungal microbiome member Barnettozyma californica
A streamlined method to determine the antibiotic resistance of plaque-forming predatory bacteria
Role of microbial life history strategy in shaping the characteristics and evolution of host-microbiota interactions
Maintenance and loss of microbe-mediated protection in the absence of pathogens
From microbes to molecules: unveiling host-microbe interactions with spatial metabolomics
Vernetzt denken – mit Systembiologie Krankheiten verstehen
Assembly of a functional neuronal circuit in embryos of an ancestral metazoan is influenced by temperature and the microbiome
Polyketide synthase-derived sphingolipids mediate microbiota protection against a bacterial pathogen in C. elegans
Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD
JAK/STAT signaling governs airway epithelial homeostasis and stress resilience in Drosophila
Time‐restricted feeding promotes longevity and gut health without fitness trade‐offs
Nicotinamide modulates gut microbial metabolic potential and accelerates recovery in mild-to-moderate COVID-19
Neonatal microbiota colonization primes maturation of goblet cell–mediated protection in the pre-weaning colon
Microbes as manipulators of egg size and developmental evolution
pelD is required downstream of c-di-GMP for host specialization of Pseudomonas lurida
Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice
Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice
Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice
The chromosome-level genome of the ctenophore Mnemiopsis leidyi A. Agassiz, 1865 reveals a unique immune gene repertoire
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time
Universal, untargeted detection of bacteria in tissues using metabolomics workflows
Microbiota-derived β-carotene is required for strobilation of Aurelia aurita by impacting host retinoic acid signaling
RANK drives structured intestinal epithelial expansion during pregnancy
Defective Atg16l1 in intestinal epithelial cells links to altered fecal microbiota and metabolic shifts during pregnancy in mice
Phage-induced disturbance of a marine sponge microbiome
Die Auswirkung zweier Mikrobiota-Bakterien auf das C. elegans-Proteom
Stochastic models allow improved inference of microbiome interactions from time series data
Unanticipated specificity in effector-triggered immunity
Combined transcriptome and proteome profiling reveal cell-type-specific functions of Drosophila garland and pericardial nephrocytes
Shaping tiny worlds: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish
Transcriptomic responses of Mediterranean sponges upon encounter with symbiont microbial consortia
Satiety controls behavior in Hydra through an interplay of pre-enteric and central nervous system-like neuron populations
The potential importance of the built-environment microbiome and its impact on human health
Gut-associated functions are favored during microbiome assembly across a major part of C. elegans life
Maribacter halichondriae sp. nov., isolated from the marine sponge Halichondria panicea, displays features of a sponge-associated life style
Wie arbeitet Wissenschaft heute? Vernetzte Zugänge für Universität und Schule
The C. elegans proteome response to two protective Pseudomonas symbionts
The archaeome in metaorganism research, with a focus on marine models and their bacteria–archaea interactions
Polyketide synthase-derived sphingolipids determine microbiota-mediated protection against pathogens in C. elegans
Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics
APEX: an Annotation Propagation Workflow through Multiple Experimental Networks to Improve the Annotation of New Metabolite Classes in Caenorhabditis elegans
Developing science outreach events based on stakeholders’ objectives and expectations – A case study of a lecture day for schools
Meet the Metaorganism: A web‐based learning app for undergraduate and graduate biology students
A mitochondrial sirtuin shapes the intestinal microbiota by controlling lysozyme expression
Four novel Caudoviricetes bacteriophages isolated from Baltic Sea water infect colonizers of Aurelia aurita
Comparative genomics of novel Bacteroides acidifaciens isolates reveals candidates for adaptation to host subspecies in house mice
Phylogenomic Testing of Root Hypotheses
One Health Assessment of an Urban Temporary Settlement Reveals Gut Microbiome Serving as Antimicrobial Resistance Gene Reservoir
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia
Evidence for existence of an apoptosis-inducing BH3-only protein, sayonara, in Drosophila
Two-Eyed Seeing and Scientific Holism in a New Science|Environment|Health Pedagogy
Hemocytes and fat body cells, the only professional immune cell types in Drosophila, show strikingly different responses to systemic infections.
Recurrent phases of strict protein limitation inhibit tumor growth and restore lifespan in a Drosophila intestinal cancer model.
The tracheal immune system of insects – a blueprint for understanding epithelial immunity.
The microbiome of the marine flatworm Macrostomum lignano provides fitness advantages and exhibits circadian rhythmicity
Spontaneous body wall contractions stabilize the fluid microenvironment that shapes host-microbe associations
Microbes as part of ancestral neuronal circuits: Bacterial produced signals affect neurons controlling eating behavior in Hydra.
Maternal provisioning of an obligate symbiont
First Steps towards a near Real-Time Modelling System of Vibrio vulnificus in the Baltic Sea
Digital microfluidics and magnetic bead-based intact proteoform elution for quantitative top-down nanoproteomics of single C. elegans nematodes
Inferring interactions from microbiome data
The nematode Caenorhabditis elegans and diverse potential invertebrate vectors predominantly interact opportunistically
Microbial community changes correlate with impaired host fitness of Aurelia aurita after environmental challenge
Antimicrobial peptides originating from expression libraries of Aurelia aurita and Mnemiopsis leidyi prevent biofilm formation of opportunistic pathogens
First insights into the Aurelia aurita transcriptome response upon manipulation of its microbiome
The Life Cycle of Aurelia aurita Depends on the Presence of a Microbiome in Polyps Prior to Onset of Strobilation
Gut-associated functions are favored during microbiome assembly across C. elegans life
Host and microbiome jointly contribute to environmental adaptation
The intricate triangular interaction between protective microbe, pathogen, and host genetics determines fitness of the metaorganism
Bacterial c-di-GMP has a key role in establishing host-microbe symbiosis
Environmental selection overrides host selection in a horizontally acquired microbiota
A novel in-vivo phagocytosis assay to gain cellular insights on sponge-microbe interactions
T6SS-mediated competitive exclusion among Pantoea agglomerans associated with plants
Closely related Bacteroides of the murine intestinal microbiota affect each other’s growth positively or negatively
A mitochondrial sirtuin shapes the intestinal microbiota by controlling lysozyme expression
Genotype-environment interactions determine microbiota plasticity in Nematostella vectensis
Sequential host-bacteria and bacteria-bacteria interactions determine the microbiome establishment of Nematostella vectensis
Pathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice
The effect of microbial selection on the occurrence-abundance patterns of microbiomes
On the effect of inheritance of microbes in commensal microbiomes
Sponge-symbiont stability in spite of antibiotic-induced microbiome disturbance
Adaptive lifestyle of bacteria determines phage-bacteria interaction
Harnessing the power of model organisms to unravel coral holobiont complexity
Stability of a dominant sponge-symbiont in spite of antibiotic-induced microbiome disturbance
Pigmentation biosynthesis influences the microbiome in sea urchins
Bacteroides muris sp. nov. isolated from the cecum of wild-derived house mice.
Biodiversity, environmental drivers, and sustainability of the global deep-sea sponge microbiome
Isolation and Characterization of the Natural Microbiota of the Model Nematode Caenorhabditis elegans
Key features of the genetic architecture and evolution of host-microbe interactions revealed by high-resolution genetic mapping of the mucosa-associated gut microbiome in hybrid mice
Symbiosis: the other cells in development
Microbiota mediated plasticity promotes thermal adaptation in the sea anemone Nematostella vectensis
Digital microfluidics supported microproteomics for quantitative proteome analysis of single Caenorhabditis elegans nematodes
On the spread of microbes that manipulate reproduction in marine invertebrates.
Denitrification in foraminifera has ancient origin and is complemented by associated bacteria.
Beyond Lynn Margulis’ green hydra
Symbiotic Algae of Hydra viridissima Play a Key Role in Maintaining Homeostatic Bacterial Colonization.
An aqueous extract of the brown alga Eisenia bicyclis extends lifespan in a sex-specific manner by interfering with the Tor-FoxO axis.
Symbiont transmission in marine sponges: reproduction, development, and metamorphosis
Presence and absence of type VI secretion systems in bacteria.
DNA methyltransferase 3A controls intestinal epithelial barrier function and regeneration in the colon
Wenn das Mikrobiom den Nerven trifft: Hydra hilft den Blick auf die Interaktion von Mikroben und Nervenzellen zu vertiefen
Hydra´s lasting partnership with microbes: key for escaping senescence?
Hydra and the hair follicle – An unconventional comparative biology approach to exploring the human holobiont.
Pangenome Evolution in Environmentally Transmitted Symbionts of Deep-Sea Mussels Is Governed by Vertical Inheritance
Population differences and host species predict variation in the diversity of host-associated microbes in Hydra
Exploring Effects of C. elegans Protective Natural Microbiota on Host Physiology.
Cacatoo: building, exploring, and sharing spatially structured models of biological systems.
The role of DNA methylation in genome defense in Cnidaria and other invertebrates
Preconditioning with natural microbiota strain Ochrobactrum vermis MYb71 influences Caenorhabditis elegans behavior
Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader.
In vitro interaction network of a synthetic gut bacterial community.
Microbial regulation of hexokinase 2 links mitochondrial metabolism and cell death in colitis.
Transposable elements promote the evolution of genome streamlining
Low-protein diet applied as part of combination therapy or standalone normalizes lifespan and tumor proliferation in a model of intestinal cancer
Metabolic dissimilarity determines the establishment of cross-feeding interactions in bacteria
Contribution of maternal and paternal transmission to bacterial colonization in Nematostella vectensis.
Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans
Antimicrobial Peptides—or How Our Ancestors Learned to Control the Microbiome
Segregational drift constrains the evolutionary rate of prokaryotic plasmids
Making the invisible visible: exploring host–microbiome interactions across different taxa using data-driven 3D visualization
Microbes to-go: slugs as source for Caenorhabditis elegans microbiota acquisition.
The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population.
Harnessing the power of host–microbe symbioses to address grand challenges.
Taking a microscale look at symbiotic interactions—and why it matters
Modeling host-associating microbes under selection.
Individuality in the Immune Repertoire and Induced Response of the Sponge Halichondria panacea
Beating in on a stable partnership.
The effects of nested miRNAs and their host genes on immune defense against Bacillus thuringiensis infection in Caenorhabditis elegans.
Primate phageomes are structured by superhost phylogeny and environment.
Constitutive immune activity promotes JNK- and FoxO-dependent remodeling of Drosophila airways.
Isobaric peptide labeling on digital microfluidics for quantitative low cell number proteomics.
Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteins.
Neurons interact with the microbiome: an evolutionary-informed perspective
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Evolution of microbiota–host associations: the microbe’s perspective
On the evolutionary origins of host–microbe associations.
Hydra and Curvibacter – an intimate crosstalk at the epithelial interface. In: Cellular Dialogues in the Holobiont.
Decoding cellular dialogues between sponges, bacteria, and phages. In: Cellular Dialogues in the Holobiont.
Lifestyle of sponge symbiont phages by host prediction and correlative microscopy
Colonization dynamics of Pantoea agglomerans in the wheat root habitat
Animal development in the microbial world: Re-thinking the conceptual framework.
Animal development in the microbial world: The power of experimental model systems.
The hygiene hypothesis, the COVID pandemic, and consequences for the humanmicrobiome
Large-scale association analyses identify host factors influencing human gut microbiome composition.
Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome.
S100A8 and S100A9 Are Important for Postnatal Development of Gut Microbiota and Immune System in Mice and Infants.
Seed-derived microbial colonization of wild emmer and domesticated bread wheat (Triticum dicoccoides and T. aestivum) seedlings shows pronounced differences in overall diversity and composition
The native microbiome is crucial for offspring generation and fitness of Aurelia aurita
Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium
Nutritional targeting of the microbiome as potential 3 therapy for malnutrition and chronic inflammation
Bacteria- and temperature-regulated peptides modulate beta-catenin signalling in Hydra
Defining the nutritional input for genome-scale metabolic models: a roadmap
Exploring the niche concept in a simple metaorganism
Microbiome-mediated plasticity directs host evolution along several distinct time scale
Metaorganismusforschung trifft Schule: Wissenschaftskommunikation an der Universität zu Kiel.
B-vitamin nutrition in the pea aphid-Buchnera symbiosis
Microbial species coexistence depends on the host environment
CeMbio – The Caenorhabditis elegans microbiome resource
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi
Prototypical pacemaker neurons interact with the resident microbiota
Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses
Genome-wide associations of human gut microbiome variation and implications for causal inference analyses
Receptors mediating host-microbiota communication in the metaorganism: the invertebrate perspective.
Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice
A high-fat diet induces a microbiota-dependent increase in stem cell activity in the Drosophila intestine.
Ecological assembly processes of the bacterial and fungal microbiota of wild and domesticated wheat species
Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment
A disease‐specific decline of the relative abundance of Bifidobacterium in patients with autoimmune hepatitis
Furbellow (brown algae) extract increases lifespan Drosophila by interfering with TOR-signalling.
A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition
NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation
Community assembly of the native C. elegans microbiome is influenced by time, substrate and individual bacterial taxa
Dynamic interactions within the host-associated microbiota cause tumor formation in the basal metazoan Hydra.
Alterations of the bile microbiome in primary sclerosing cholangitis
An integrated metagenome catalog reveals new insights into the murine gut microbiome
FAMIN Is a Multifunctional Purine Enzyme Enabling the Purine Nucleotide Cycle.
Are noncommunicable diseases communicable?
Adrenergic signaling in muscularis macrophages limits infection-induced neuronal loss.
Autophagy of intestinal epithelial cells inhibits colorectal carcinogenesis induced by colibactin-producing Escherichia coli in Apc(Min/+) mice.
The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans
Bdellovibrio and like organisms are predictors of microbiome diversity across diverse host groups.
Factors that affect the translation of dietary restriction into a longer life
Advancing our functional understanding of host–microbiota interactions: a need for new types of studies
Host-microbe interactions in the chemosynthetic Riftia pachyptila symbiosis
Dietary tryptophan links encephalogenicity of autoreactive T cells with gut microbial ecology
The microbiota promotes arterial thrombosis in low-density lipoprotein receptor-deficient mice
Prdx4 limits caspase-1 activation and restricts inflammasome-mediated signaling by extracellular vesicles
Microbiota differences of the comb jelly Mnemiopsis leidyi in native and invasive sub-populations
A phage protein aids bacterial symbionts in eukaryote immune evasion
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
Host-microbe-drug-nutrient screen identifies bacterial effectors of metformin therapy
Interactions and coadaptation in plant metaorganisms
Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated
The inducible response of the nematode Caenorhabditis elegans to members of its natural microbiome across development and adult life
Temperature and insulin signaling regulate body size in Hydra by the Wnt and TGF-beta pathways
Consistent alterations in faecal microbiomes of patients with primary sclerosing cholangitis independent of associated colitis
Currency, Exchange, and Inheritance in the Evolution of Symbiosis
Alterations of the bile microbiome in primary sclerosing cholangitis
The microbiome mediates environmental effects on ageing
Transgenesis in Hydra to characterize gene function and visualize cell behaviour.
Neutrality in the metaorganism
Evolutionary “experiments” in symbiosis: the study of model animals provides insights into the mechanisms underlying diversity of host-microbe interactions
Exposure of the host-associated microbiome to nutrient-rich conditions may lead to dysbiosis and disease development – an evolutionary perspective.
Nutzpflanzen nachhaltig vor Krankheiten schützen?
aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data
Resolving structure and function of metaorganisms through a holistic framework 2 combining reductionist and integrative approaches
Drosophila melanogaster in nutrition research—the importance of standardizing experimental diets
Potential role of host-derived quorum quenching in modulating bacterial colonization in the moon jellyfish Aurelia aurita
A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life-history traits
Epithelial endoplasmic reticulum stress orchestrates a protective IgA response
Natural C. elegans microbiota protects against infection via production of a cyclic lipopeptide of the viscosin group
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family
Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts
Marine Sponges as Chloroflexi Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade
Functions of the Microbiota for the Physiology of Animal Metaorganisms
Hydra as Model to Determine the Role of FOXO in Longevity
Differential expression of immune receptors in two marine sponges upon exposure to microbial-associated molecular patterns.
ATG16L1 orchestrates interleukin-22 signaling in the intestinal epithelium via cGAS-STING.
Gut dysbiosis with Bacilli dominance and accumulation of fermentation products precedes late-onset sepsis in preterm infants.
Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development
Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis.
A Drosophila model of cigarette smoke induced COPD identifies Nrf2 signaling as an expedient target for intervention.
Impaired Wnt signaling in dopamine containing neurons is associated with pathogenesis in a rotenone triggered Drosophila Parkinson’s disease model.
Neonatal selection by Toll-like receptor 5 influences long-term gut microbiota composition.
Grow With the Challenge – Microbial Effects on Epithelial Proliferation, Carcinogenesis, and Cancer Therapy
The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract.
Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development.
Low-level mitochondrial heteroplasmy modulates DNA replication, glucose metabolism and lifespan in mice.
Rethinking the Role of the Nervous System: Lessons From the Hydra Holobiont.
Non-senescent Hydra tolerates severe disturbances in the nuclear lamina.
The genomic rate of adaptation in the fungal wheat pathogen Zymoseptoria tritici
Predicted bacterial interactions affect in vivo microbial colonization dynamics in Nematostella
Carrying capacity and colonization dynamics of Curvibacter in the Hydra host habitat
Stem cell transcription factor FoxO controls microbiome resilience in Hydra.
The Saposin-Like Protein AplD Displays Pore-Forming Activity and Participates in Defense Against Bacterial Infection During a Multicellular Stage of Dictyostelium discoideum.
The sponge holobiont in a changing ocean: from microbes to ecosystems.
Epidermal lipid composition, barrier integrity, and eczematous inflammation are associated with skin microbiome configuration
The Caenorhabditis elegans proteome response to naturally associated microbiome members of the genus Ochrobactrum
Miniaturized dispersive liquid-liquid microextraction and MALDI MS using ionic liquid matrices for the detection of bacterial communication molecules and virulence factors.
The antibiotic resistome and microbiota landscape of refugees from Syria, Iraq and Afghanistan in Germany.
Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?
How the microbiome challenges our concept of self.
Nutritional regimens with periodically recurring phases of dietary restriction extend lifespan in Drosophila.
Temperate phages as self-replicating weapons in bacterial competition.
We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project.
Spontaneous body contractions are modulated by the microbiome of Hydra.
Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches.
A secreted antibacterial neuropeptide shapes the microbiome of Hydra.
Drosophila Fecal Sampling.
Identification and Quantification of N-Acyl Homoserine Lactones Involved in Bacterial Communication by Small-Scale Synthesis of Internal Standards and Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry.
Application of the distance-based F test in an mGWAS investigating β diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci.
The Role of Monoaminergic Neurotransmission for Metabolic Control in the Fruit Fly Drosophila Melanogaster.
The resilience of the intestinal microbiota influences health and disease.
Microbial contributions to the persistence of coral reefs.
The Natural Biotic Environment of Caenorhabditis elegans.
Caenorhabditis elegans as a model for microbiome research.
Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection. Gastroenterology.
Emerging Sponge Models of Animal-Microbe Symbioses.
The Origin of Mucosal Immunity: Lessons from the Holobiont Hydra.
Differential quantitative proteome analysis of Escherichia coli grown on acetate versus glucose.
Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling.
Octopamine controls starvation resistance, life span and metabolic traits in Drosophila.
Enterococcus hirae and Barnesiella intestinihominis Facilitate Cyclophosphamide-Induced Therapeutic Immunomodulatory Effects.
Transitioning from Microbiome Composition to Microbial Community Interactions: The Potential of the Metaorganism Hydra as an Experimental Model.
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.
Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei.
Epithelial IL-23R Signaling Licenses Protective IL-22 Responses in Intestinal Inflammation.
Using Nematostella vectensis to Study the Interactions between Genome, Epigenome, and Bacteria in a Changing Environment.
Intestinal FoxO signaling is required to survive oral infection in Drosophila.
Antimicrobial effectors in the nematode C. elegans – an outgroup to the Arthropoda.
The native microbiome of the nematode Caenorhabditis elegans: Gateway to a new host-microbiome model.
Molecular architecture of the fruit
fly’s airway epithelial immune system.
