Publications

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2026
C1

Gut motility as a driver of microbial community architecture and host–microbe evolution

Schwalbe, M., Bosch, T., & El Aidy, S. (2026). Trends in Microbiology, 34(5), 485–496. doi: https://doi.org/10.1016/j.tim.2025.12.016

2026
A1

Dietary patterns influence the in silico GABA production capacity of Bifidobacterium adolescentis HD17T2H and other human gut bacteria

Homscheid, A., Moors, K. A., Nap, B., Lieb, W., Franke, A., Laudes, M., Thiele, I., & Marinos, G. (2026). Scientific Reports. doi: https://doi.org/10.1038/s41598-026-43006-9

2026
C5

Policy in Practice: How to do the Nagoya Protocol: common misconceptions, challenges and best practices for access and benefit-sharing compliance

Faggionato, D., Muñoz-García, M., Kostic, T., Ferrari, M. L., Vonaesch, P., Poyet, M., Portier, P., Ryan, M. J., Djeddour, D., Stumptner, C., Varese, G. C., Zuzuarregui, A., Groussin, M., Schloter, M., Finn, R. D., Haas, A. S., Probert, I., Verkley, G., Overmann, J., & Scholz, A. H. (2026). Sustainable Microbiology, 3(2), qvag007. doi: https://doi.org/10.1093/sumbio/qvag007

2026
C5

Policy Briefing: from access to use—untangling the international legal frameworks that govern microbial resources

Faggionato, D., Muñoz-García, M., Kostic, T., Ferrari, M. L., Vonaesch, P., Poyet, M., Portier, P., Ryan, M. J., Djeddour, D., Stumptner, C., Varese, G. C., Zuzuarregui, A., Groussin, M., Schloter, M., Finn, R. D., Haas, A. S., Probert, I., Verkley, G., Overmann, J., & Scholz, A. H. (2026). Sustainable Microbiology, 3(1), qvag005. doi: https://doi.org/10.1093/sumbio/qvag005

2025
A1

Virtual Colon: spatiotemporal modeling of metabolic interactions in a computational colonic environment

Marinos, G., Zimmermann, J., Taubenheim, J., & Kaleta, C. (2026). Msystems, 11(1), e01391-25. doi: https://doi.org/10.1128/msystems.01391-25

2025
C2

Fecal detection of calprotectin subunits links inflammatory bowel disease activity with chronicity of intestinal inflammation

Jukic, A., Hilbe, R., Zundel, L., Willeit, P., Faserl, K., Plattner, C., Zollner, A., Meyer, M., Siegmund, K., Klepsch, V., Marteau, V.,  Vich Vila, A., Schwärzler, J., Vouk, K., Kozsar, A., Rieder , D., Weichberger, A., Sarg, B.,  Grabherr, F., Mayr, L., Moser, P., Nemati, N., Scholl-Bürgi, S., Karall, D., Vogel, G. F., Welz, L., Aldrian, D., Koch, R., Pfister, A., Ran, Q., Kaser, A., Blumberg, R. S., Tancevski, I., Sommer, F., Bacher, P., Schreiber, S., Rosenstiel, P., Aden, K., Baier, G., Bakiri, L., Müller, T., Weiss, G., TRR241 IBDome Consortium, Weersma, R. K., Trajanoski, Z., Wagner, E. F., Tilg, H., Adolph, T. E., & Adolph, T. E. (2025). Gastroenterology. doi: https://doi.org/10.1053/j.gastro.2025.08.040

2025
C2

Sex-specific lifespan extension and anti-obesogenic effects of Salicornia europaea extract through Tor signaling modulation in Drosophila

Tahan Zadeh, N., Knop, M., Ulrich, L. M., Bruchhaus, I., Lang, R., Lüersen, K., Rimbach, G., & Roeder, T. (2025). Nutrients, 17(19), 3065. doi: https://doi.org/10.3390/nu17193065

2025
A4

Applying evolutionary theory to understand host–microbiome evolution

Week, B., Russell, S. L., Schulenburg, H., Bohannan, B. J. M., & Bruijning, M. (2025). Nat Ecol Evol . doi: https://doi.org/10.1038/s41559-025-02846-w

2025
C2

Chronic airway inflammation in Drosophila lacking the A20-like protein Trabid

Bossen, J., Knop, M., Niu, X., Thiedmann, M., Prange, R., Tahanzadeh, N., Franzenburg, S., Bruchhaus, I., Heine, H., & Roeder, T. (2025). Frontiers in immunology, 16, 1564386. doi: 10.3389/fimmu.2025.1564386

2025
C2

ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation

Coleman, O. I., Sorbie, A., Riva, A., von Stern, M., Kuhls, S., Selegato, D. M., Siegert, L., Keidel, I., Köhler, N., Wirbel, J., Kacprowski, T., Dunkel, A., Pauling, J. K., Plagge, J., Mediel-Cuadra, D., Wagner, S. J., Chadly, I., Bierwith, S., Peng, T., Metzler, T., Li, X., Heikenwälder, M., Schafmayer, C., Hinz, S., Röder, C., Röcken, C., Zimmermann, M., Rosenstiel, P., Steiger, K., Jesinghaus, M., Liebisch, G., Ecker, J., Schmidt, C., Zeller, G., Janssen, K. P., & Haller, D. (2025). Nature Metabolism, 7(9), 1830-1850. doi: https://doi.org/10.1038/s42255-025-01350-6

2025
A1
A4

The interaction between the nematode Caenorhabditis elegans and its coexisting fungal microbiome member Barnettozyma californica

Petersen, C., Griem‐Krey, H., Christophersen, C. M., Schulenburg, H., & Habig, M. (2025). Environmental Microbiology Reports, 17(4), e70177. doi: https://doi.org/10.1111/1758-2229.70177

2025
A4

A streamlined method to determine the antibiotic resistance of plaque-forming predatory bacteria

Wülbern, J., Carstensen, Y., Buchholz, F., Schulenburg, H., & Johnke, J. (2025). Frontiers in Microbiology, 16, 1582371. doi: https://doi.org/10.3389/fmicb.2025.1582371

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